YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114196509, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.97
Transmembrane Helix	14	33	0.92
Non-Cytoplasmic	34	39	0.78
Transmembrane Helix	40	61	0.91
Cytoplasmic	62	84	0.86
Transmembrane Helix	85	106	0.93
Non-Cytoplasmic	107	142	0.96
Transmembrane Helix	143	162	0.95
Cytoplasmic	163	173	0.80
Transmembrane Helix	174	195	0.89
Non-Cytoplasmic	196	215	0.85
Transmembrane Helix	216	236	0.90
Cytoplasmic	237	242	0.79
Transmembrane Helix	243	264	0.86
Non-Cytoplasmic	265	275	0.82
Transmembrane Helix	276	298	0.90
Cytoplasmic	299	306	0.85
Transmembrane Helix	307	326	0.92
Non-Cytoplasmic	327	429	0.62
Transmembrane Helix	430	448	0.92
Cytoplasmic	449	468	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTTPSSLS HRETWRLLLL AGACIAVLVN TFQGDGAPLV ASIAFSGIVF AATYSLIRWL  60
   61 GPVFIKAGLK GRDMAKPRRP EIPETMGAVC ATVYLLALIF FIPFAFYKDI VAATSGGGNR 120
  121 DVVLEVQHVE TGRMLHRFPH GRLASYLSGL LSLQCIVILG IGDDLLDIRW RHKVLIPAFG 180
  181 AIPMLIVYFV DFGVTQVVVP VPLQPYLGPV VDLGWLYYAY MAAVAIFCPN SINMLAGING 240
  241 VEVAQSLVIA VLLIVNDALY LAPITPFPHP ATDSHLFSLY FLLPFVGVSL ALLFHNWYPS 300
  301 KVFVGDTYCY FAGMVFAVVG ILGHFSKTLL LLFIPQIFNF LYSTPQLFKV IPCPRHRLPK 360
  361 FNAATGLLDA SVTEWNIPPS PLIAAALDLL HSLRLVRVTK NEKGEIVEST NLTILNLWLV 420
  421 WMGPMKENRL AWSMVGVQVV CGLAGLFVRH RLALLVFRED NRTFGIGV