YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCB5R_ASPTN
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFLQDNGD LSAVLVKFAP FAVAVIAILA AWKFTGSSKP RKVLNPSEFQ NFVLKEKTDI  60
   61 SHNVAIYRFA LPRPTDILGL PIGQHISLAA TIEGQPKEVV RSYTPISSDN EAGYFDLLVK 120
  121 AYPQGNISKY LTTLKIGDTL KVRGPKGAMV YTPNMCRHIG MIAGGTGITP MLQIIKAIIR 180
  181 NRPRNGGNDT TKIDLIFANV NEEDILLRDE LEKLAKEDDG FRIFYVLNNP PPGWNGGFGF 240
  241 VTAEMIKEHL PAPAKDVKIL LCGPPPMVSA MKKATESLGY TKARPVSKLE DQVFCF

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.64
Transmembrane Helix	13	35	0.85
Cytoplasmic	36	158	0.61
Transmembrane Helix	159	175	0.33
Non-Cytoplasmic	176	296	0.60