YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114195686, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSTRFLRI PRPETFLYVM SLRTGASLIT LSLLLNKISG LYGLLALLTG YHLSPVQLSM  60
   61 YLYSLVALGI TVYLFPHIRK QSPLQCLALA WLYLFDSIIN AAYTAAFGVT WFLVISQHYE 120
  121 NGNASGPGSE TIAQTAGFTS PKYDSSSAEG DHYARNSDGL SNAVTQPESF QSIMFICMLW 180
  181 AIRAYFVFVM LAFARQALRI YVAVPRHMQL PTHSRNTSVA SVASMADIDR EPFSPYSPDG 240
  241 QGWQGKLGRA MISVGRNYWL GEDEEGGNWM STISRRFRAR GESNELPGPL ERERRRRSGT 300
  301 GPPQPSQSAV QAAALQQPIY EQSPGVNVKM QDWGESR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.98
Transmembrane Helix	16	38	0.82
Non-Cytoplasmic	39	57	0.75
Transmembrane Helix	58	77	0.92
Cytoplasmic	78	88	0.87
Transmembrane Helix	89	114	0.82
Non-Cytoplasmic	115	171	0.97
Transmembrane Helix	172	193	0.86
Cytoplasmic	194	337	0.97