YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHO2_ASPTN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.91
Transmembrane Helix	82	101	0.90
Non-Cytoplasmic	102	110	0.68
Transmembrane Helix	111	131	0.80
Cytoplasmic	132	197	0.88
Transmembrane Helix	198	217	0.79
Non-Cytoplasmic	218	225	0.58
Transmembrane Helix	226	243	0.91
Cytoplasmic	244	255	0.64
Transmembrane Helix	256	271	0.38
Non-Cytoplasmic	272	286	0.50
Transmembrane Helix	287	309	0.63
Cytoplasmic	310	398	0.75
Transmembrane Helix	399	421	0.77
Non-Cytoplasmic	422	468	0.58
Transmembrane Helix	469	491	0.88
Cytoplasmic	492	500	0.56
Transmembrane Helix	501	523	0.86
Non-Cytoplasmic	524	561	0.59
Transmembrane Helix	562	592	0.76
Cytoplasmic	593	955	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRGLSTGTH NDNEGLRERP VASQSASTLS PEALTATGDV EPKDTGKELK TYGRTPDGTV  60
   61 FTVPQTHDMV SQLLSPSEPK NLSDIIVLAI LGAHILLIWA LPKGAKVPVS AVLYLFWRAG 120
  121 YNAGIGWLLH NQSHHKTLVR WAEKTKIFVN PATGQNPHPH LYNLIKRELE TKIPHDYSFE 180
  181 KAPLEYNTWL VFRRLVDLIL MCDFTSYCLF AIACSHHPVN ESLLMTVLRW FSGIVLVLFN 240
  241 LWVKLDAHRV VKDYAWYWGD FFYLIDQELT FDGVFEMAPH PMYSVGYAGY YGISLMAASY 300
  301 KVLFISIIAH AAQFAFLVFV ENPHIDKTYN PPPPRKRTID QDTASTTTHT TDSPIAPAPV 360
  361 DENVPHAPTF SSRPPPSVHN LLGFHNLDLY RITDTSSMLV QFLVFAVTVL TPSTPWYQFL 420
  421 FVANAAVWRL WYSVGIGYLL NRQSNCKAWT RHFVKYGETP HEAWNQWKGT YHLSMIMCYA 480
  481 SFIAAVWKMY TLPSDWGYGL VLLRHVLGAG LICLQIWTSV SIYESLGEFG WFYGDFFYDE 540
  541 SPKLTYNGIY RFLNNPERVL GLAGVWGAVL ITSSGAITFL ALLSHILSLA FIQFIERPHM 600
  601 QKLYGQSIRR DAGLVKNLKR SLPPPLKQLH GSMDKIVDGS FEFIEDFLEN ARPKLAAGVD 660
  661 TFVKDTTALF QKYPARVTIT RIDEDVAGYD SRDYSLEVEG TDSSALAECD QSSGREGANA 720
  721 RMPLDRRGDL KNLVFEYGAP IKVKWTAPLN HSKKDWIGLY RVTDNTSREI TKVSSQGRWI 780
  781 AVNEGSYDNL TCEKGIVSSD VVIPAPHGDN REMASGEVIF SSDKLFWTQG VFEFRYHHNG 840
  841 KHNVMAISRP FEIRIRRFEE EGHHEMMQTS VENSLLPVVR NCFDRDPEVA PETVDEQFGS 900
  901 LVERDGKYAK RVVFAVHQMF GIEFAPEVVR ADGTVRNLAW RICNAKKVLA PYNRS