YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115387829, gi...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.68
Transmembrane Helix	7	29	0.67
Non-Cytoplasmic	30	464	0.92
Transmembrane Helix	465	488	0.78
Cytoplasmic	489	496	0.81
Transmembrane Helix	497	517	0.92
Non-Cytoplasmic	518	523	0.71
Transmembrane Helix	524	540	0.79
Cytoplasmic	541	550	0.83
Transmembrane Helix	551	576	0.79
Non-Cytoplasmic	577	586	0.71
Transmembrane Helix	587	607	0.90
Cytoplasmic	608	613	0.82
Transmembrane Helix	614	633	0.94
Non-Cytoplasmic	634	638	0.81
Transmembrane Helix	639	659	0.92
Cytoplasmic	660	676	0.75
Transmembrane Helix	677	697	0.86
Non-Cytoplasmic	698	706	0.78
Transmembrane Helix	707	727	0.87
Cytoplasmic	728	734	0.70
Transmembrane Helix	735	755	0.81
Non-Cytoplasmic	756	758	0.50
Transmembrane Helix	759	778	0.59
Cytoplasmic	779	828	0.58
Transmembrane Helix	829	850	0.85
Non-Cytoplasmic	851	867	0.54
Transmembrane Helix	868	892	0.82
Cytoplasmic	893	898	0.57
Transmembrane Helix	899	921	0.88
Non-Cytoplasmic	922	930	0.53
Transmembrane Helix	931	954	0.82
Cytoplasmic	955	989	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLGRVGFL TIAVVFHLIY SYSIFDIYFV SPIVNGMRSY RVEREPGVEA PAKRLVLFVA  60
   61 DGLRADKAFQ ALPDPDEPAD STHTDPIYLA PFIRSRVLSH GTFGISHTRV PTESRPGHVA 120
  121 LIAGLYEDVS AVTTGWKLNP VNFDSVFNRS RHTWSWGSPD ILAMFKEGAV PGRVDADMYS 180
  181 EEEEDFTSDA RKLDIWVFDK VKELFAAAKK DPELDARLRE DKLVFFLHLL GIDTTGHFHR 240
  241 PYSKEYLRNI KLVDSGVKEI TKLVEDFYGD DKTAFIFTAD HGMSDWGSHG DGHPDNTRTP 300
  301 LVAWGSGVAR PEYYEGDGLS GHEDGVSADW GLESVRRHDV AQADVAALMA YLVGLDFPTN 360
  361 SVGQLPLEYL KASPEEKASA TLVNLKEVLE MYRVKEEQKK AVLLRYKPFK PLAGTSAIEA 420
  421 QLEEIESLIA SGSYDDSIEK SSALLATTLE GLRYLQTYDW VFLRTIVTFG YLGWIAYALT 480
  481 TVIDLHVLRG VSDSNRTLTS TIFFSSILVA LFSVLVYQKS SWRYYLYAAF PIFFWEEVFA 540
  541 RRKALVAGRE ILLGHVSSAS GYITFGAQLL MFLGVLEALV QSYFQREIYT VCFILGAFWP 600
  601 LAYGTGFLKK NKLLCASWTV GCLLMSTFTL LPAGKTEDIN MITVGALLMF FTGLLYLLLE 660
  661 DDILGQTAIS SCGSRTVMGI QVGMVLLALV VTRSSAASLQ AKQGLPFGNQ VVGWSILVAS 720
  721 LLLPFLHRLY PNSHYLHRLM VIFLTFSPTF IILTISYEGL FYFVFCMTLI TWVRLEHAIY 780
  781 VNTAAPRVVQ GSAAGSDTVT AKKPATKATT VVEGHAYGYR TLSVSDARVA LFFFYLLQSA 840
  841 FFSTGNIASV SSFSMESVTR LIPVFNPFAQ GALLILKLLI PFAIISANLG ILNRRLEVAP 900
  901 SALFMVVMSI SDVMTLNFFY MVRDEGSWLD IGTTISHFLI ASLLCTFVAG LEFLSEAFVG 960
  961 GVEFGSVDAA VTATNGVVGN GRATKGEGK