YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114195303, gi...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARVTPSKQ AASSLENLKM SDSPVKKLNF DTTGKENAPS TVPVDAPTKV VAEKPAEALK  60
   61 VAPGIKEMEA NEPLLQENPH RFVLFPIKYH EIWQMYKKAE ASFWTAEEID LSKDLHDWNN 120
  121 RLNEDERYFI SHVLAFFAAS DGIVNENLVE RFSGEVQIPE ARCFYGFQIM IENIHSETYS 180
  181 LLIDTYIKEP KQRTYLFDAI DNIPCIAKKA DWAIKWIQDQ ESTFGQRLVA FAAVEGIFFS 240
  241 GSFASIFWLK KRGLMPGLTF SNELISRDEG LHTDFACLLF SHLNNRPSKQ VVEDIIVEAV 300
  301 AIEKEFLTDA LPVALLGMNS KLMCQYIEFV ADRLLVALGN NKYFHSTNPF DFMESISLAG 360
  361 KTNFFEKRVG DYQKAGVMAS TKKEAKEETS NDGGLNFDED F

Type	Start	End	Confidence
Non-Cytoplasmic	1	227	0.94
Transmembrane Helix	228	249	0.82
Cytoplasmic	250	401	0.82