YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115389854, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQRYQRVN AHDDDEPHSH SSIPLHSNLT PSSPPPSFRS RSSSISSRRL LHDPSRSNDE  60
   61 DQTLADAFGD GSDSEAEDEP DDRQRLMRAH PEPRTAGDSS TEAAASSSGA SSGQSGSQPP 120
  121 AGIVRRQTLL PSFTSSQSSG GGRVIHSSND GVFANLAAKP ERGEKNEDLP PSYEEAAADA 180
  181 TPPYWETTIL APGISSDEVF VDGLPVGSVF SFVWNAMISM SFQLVGFLLT YLLHTTHAAK 240
  241 NGSRAGLGLT LVQYGFYMKG GSDTGGSDDG GSGQYATPPD PNSHNFDPNA MGDNGGDGGG 300
  301 GSSSISTSEW ISYVLMIVGW FILIRSISDF LRARRHEQLV LQSPDRGLGV PVIAEGERSE 360
  361 TVV

Type	Start	End	Confidence
Cytoplasmic	1	211	0.49
Transmembrane Helix	212	233	0.76
Non-Cytoplasmic	234	309	0.78
Transmembrane Helix	310	327	0.91
Cytoplasmic	328	363	0.93