YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115389764, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQSKGGRRR RSSSIIYQEP PESIEHTSDQ AALPNLNANW VNAKGAWTIH FVLIIALKIF  60
   61 YDIIPGVSQE TSWTLTNISY MFGSFLMFHW VRGIPFEFNA GAYDNLNMWE QIDNGDQYTP 120
  121 TKKFLLCVPI CLFLLSTHYT HYDLTYFTIN FLATLGVVIP KLPFSHRLRI GLFANDLDE

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.52
Transmembrane Helix	43	64	0.76
Cytoplasmic	65	72	0.53
Transmembrane Helix	73	93	0.83
Non-Cytoplasmic	94	143	0.60
Transmembrane Helix	144	164	0.81
Cytoplasmic	165	179	0.87