YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115389642, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPSMIDLE QRNRLPTLFE VLSRRTLAPV DLFSFYIYMR DQQRSVDYLD FWLDVSQHMS  60
   61 LCRHYVRELR RSVLVATPDL EKTHSKGSSA ALETLEHFGD IPLVEAGPSR HGYQDLDDKD 120
  121 VDQRLSAFLR SDGNTSGHSP QNSLGSQNAA RTQSNEQPRA SSGTQNDSNS PGHTVARADI 180
  181 RASAEKILYT YLLPGAEREI VLPEPMVSTI INLVEDDGRD DPEVFDPAKD YVFQAMERDA 240
  241 FPGFLQAKAL GNLVPLSIVA RLAFALISFG GGFWGAFYVV LRNKPRHIRC WVILPFIVAA 300
  301 YFIVSYQYKI DPVMAFLGYS EYTFMSWSPI REPYVRKLLN KRATATMGIA AFVAAALSVL 360
  361 FIFVPGTML

Type	Start	End	Confidence
Non-Cytoplasmic	1	257	0.90
Transmembrane Helix	258	281	0.87
Cytoplasmic	282	287	0.85
Transmembrane Helix	288	306	0.90
Non-Cytoplasmic	307	312	0.62
Transmembrane Helix	313	330	0.57
Cytoplasmic	331	342	0.62
Transmembrane Helix	343	365	0.90
Non-Cytoplasmic	366	369	0.59