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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114194659, gi...
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIAAMEGVV SAFLSYSTNP LTVSEAALDH DYTLLSMRRC GDSSRDLWNG LVATTKKIEE  60
   61 TRRTLEQTQK HYDYLLSRYS AQSKSKEPSS LREDAFQLHE ARKAYLKASM DFSVQAPQLR 120
  121 NGLDRLLVRV SFDQWREFKL FHTNNSSTFV KWGQEMDRIK GWIHEMEGSE KSSKRELLAA 180
  181 RKEIEEAAEV TARPSRELDD YSISTVPYLG SRPLSSLNMT GEAKPEKQGW VYLRTLSGKP 240
  241 TRTNWVRRWA FLKNGIFGCL VQGSRTGGVE ESERIGVLLC SIRPAFQEER RFCFEVKTKS 300
  301 NSIMLQAETQ KELMEWIAAF EAAKRKALEN PASTDLSVSG KVTIQDPAFA ISQPPAPEFA 360
  361 ADPADSLTPH SSEEHGSDRS GLLPVPDRDP NGTRSSNDFS AYRRLTSMDG DTSAREHTNR 420
  421 IIQKLDLHRK SGHTVQPSNS IPGAGGGIAS LISASHNALV SGTPLPPSLP DNEANRGRIL 480
  481 TNRSEFPPTT LAPQTLANPP APTSMSKAAV MVSNERGIGL GQADKTGGMP SGMMANLWGS 540
  541 SNWGFVNRLE RERLGLSEVS GGSAAQNRPS SPMSDSSKQV LPAEAESAGG STARKQSISG 600
  601 PRHRQTVSLD GDASKVQRAI LGVSHEYPSY YPQQLRIQDA QFRLLFPNVK REEPLVMVFR 660
  661 ATWNPNDQQE FPGRAYVTTR DIYFYSHYFG LVLTTSVSLE SIKEVTAASG RDCDFLFLHT 720
  721 IPLPGDDTPG RVTIKTFLEP LKLLQRRLNF LIHDSTAVEP MGLEQIFKTL TKMESDVART 780
  781 PSVDSWEDVG ALGEKDEDDG VDQRLRKDLR APIYIDKDLD TSSKRALDGK DIPKFRLPTQ 840
  841 AVQYVPQGNL HLAAEKVFDV SPKAIFHILF GDKSAVWQLL LYQRKAKDIK QGPWTRNETR 900
  901 HLRRDFQYQI ETTDMFGRTE GKAISDYQMI DVLNDHLCYV ITDKRTPWHL PFKRSFRLVS 960
  961 KIVITFVAKG RSKLAVYTKV EWLSTPYGLQ AVINKQAMGD LEQDALDLVD LVGDQVRRLG1020
 1021 AHSRTKKAIT IFGHVGRQTF VSQFPGEVDV RLEPRKPRQQ RTLVQLLYET FVSFAESAIS1080
 1081 SVMLWTFALL RWVWKTTNAN KMILLLLVSS MFINGFYTSR DASEWWHERS AESFMARLGV1140
 1141 HPDHVMSKAI YMRDIDEAVA NTTIADLNGT VSDCFATFQQ QTIRNNGASA SLDVSGPRDS1200
 1201 VTKSAARRLQ HTRERLATYR HNLLVALRVV NSIEKELIQN EWERWLRQEL KRCRQVEVLL1260
 1261 GKGEGEDFDM QMNRLGQTVF ADLSDDVRQW YEQYCTSCHK EQEQIERNGR IDGAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle