YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114194562, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.97
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	107	0.98
Transmembrane Helix	108	130	0.83
Cytoplasmic	131	144	0.89
Transmembrane Helix	145	165	0.93
Non-Cytoplasmic	166	176	0.86
Transmembrane Helix	177	196	0.94
Cytoplasmic	197	211	0.81
Transmembrane Helix	212	231	0.94
Non-Cytoplasmic	232	238	0.81
Transmembrane Helix	239	259	0.94
Cytoplasmic	260	267	0.89
Transmembrane Helix	268	288	0.91
Non-Cytoplasmic	289	299	0.73
Transmembrane Helix	300	318	0.89
Cytoplasmic	319	333	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLGGSSRTT AFTCLLFFLL ATFVGRSTAS LGDHLPDFKE CVKICQSENC QDGSSVIPFH  60
   61 LRLLLWTCPA ECDYTCQHVV TDRRVARDPP MLNPVVQFHG KWPFRRILGM QEPFSVLFSF 120
  121 FNFLAHWHGI SRLRETIPSW HSLRGYYLAF GYCGLACWTF SMLFHTRDFP LTEKLDYFGA 180
  181 GANVMYGMYL AIIRIFRLDQ EEPRHKPTLR RLLTAVCVLL YAMHVCYLSF WSWDYTYNMI 240
  241 ANIVVGMTQN VLWVAFSLFR YQKNGKPWHV WPAMIVAWIM LAMSLELLDF APWHGLIDAH 300
  301 SLWHLGTVIP TAWWYLYLIK DVQDDVAGDR LKA