YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115390985, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASLDQLV KGAPVPNNRH STSSTASSDS VSPPPRSSTY SSAPRPSTPD PLASLPSSPP  60
   61 QIYLNLLILE SSLRAQYLSL RERRRQNTFF ILLLLLWIAY FAYALFLRPR EDGRGVGGSV 120
  121 YWVVEMGEKV ALLGGVVTAL LVWGTGQWER GVRWPRRWLA VANRGLRNMN TKIVVIRGPW 180
  181 WQELLSYLSF LFPFSAPFFP SPAGDFHYIE RPASDKRVGG RQHHQPYYSV DNESGLVEED 240
  241 LSPGGDYIRL LLLPKSFSPE FRENWDDYRT EFWEKENERR AQLREKLRQR ERMLAKQEGG 300
  301 WFWWIGIGWK ASKRRRLAAA TLSEKGHHPR HHHQHSNVSR HALEPKSPAR RSTRSESHSR 360
  361 TPSRSTTPVD TDDRPPSRSG GRPRRGSANS

Type	Start	End	Confidence
Cytoplasmic	1	87	0.96
Transmembrane Helix	88	107	0.95
Non-Cytoplasmic	108	129	0.88
Transmembrane Helix	130	148	0.93
Cytoplasmic	149	183	0.84
Transmembrane Helix	184	199	0.53
Non-Cytoplasmic	200	390	0.66