YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115390915, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.83
Transmembrane Helix	59	78	0.82
Non-Cytoplasmic	79	111	0.42
Transmembrane Helix	112	134	0.65
Cytoplasmic	135	145	0.75
Transmembrane Helix	146	167	0.92
Non-Cytoplasmic	168	177	0.76
Transmembrane Helix	178	201	0.84
Cytoplasmic	202	216	0.76
Transmembrane Helix	217	238	0.92
Non-Cytoplasmic	239	272	0.84
Transmembrane Helix	273	295	0.89
Cytoplasmic	296	308	0.74
Transmembrane Helix	309	329	0.83
Non-Cytoplasmic	330	340	0.64
Transmembrane Helix	341	366	0.85
Cytoplasmic	367	373	0.65
Transmembrane Helix	374	393	0.93
Non-Cytoplasmic	394	399	0.68
Transmembrane Helix	400	421	0.90
Cytoplasmic	422	432	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGLSSRNGS FEHGEREALI NETNRINSGL HPRHKPRSHW TQWPSQAAKL TWTTLARDYV  60
   61 NILLVFVPLG IIAGALHWDS TAVFVLNFFA IVPLASLLSF ATEELAATMG QAMGGLMNAT 120
  121 FGNAVELIVS IIALKERQIR VVQASMLGSI LSNILLVLGC CFFVGGLRYS EQTFNSTVAS 180
  181 TMSSLMTVSS ASLIIPATLY ASMTSAKGKE SETQQNILLV SHGTAIILLI LYVMYLYFQL 240
  241 RSHASLFEET GSDDAENGDD MVEAEEEHIL SPWAATVALI VVTVLVAVCA DYLVGSIDSI 300
  301 VEKTGMSRTF IGLVLIPIVG NAAEHVTAVV VAWKGKMDLA IGVAIGSSLQ IALFVTPFLV 360
  361 VLGWIIHVPM SLHFQTFETV AFFISGLVVT FLIQDGKSNY LEGGLCLGMY VILALAFYVY 420
  421 PDNVDDSAMF RS