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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115390913, gi...
Protein type: Transmembrane
Type Confidence: 0.73
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRLNLFSV RAPVPVLRQP STPIATALNT NRTYAARGIT SSSRTQRRWN SSGSGGKNDS  60
   61 KLNSTTKEQL PHVSEEAAEM RKIMDKKCDG TAASPELEQG TPIQEILRRD KEALKHAPKV 120
  121 MQDQVKGPSG SRSFSTSTRR RQADLHGQNA GFDDQTAAVV ANMISHVDQQ AAELHPGLKF 180
  181 EAPETLPKTE NFRTRYDSLL EQFTKLLMRD GKLSKAQKNM AFILDHLRTA SPPQPNPKRR 240
  241 LLPGPPGPQL PLNPVLYLTL IVDSVAPLIK IRQQKGIAGG GASVQIPVPL MQRQRRRTAI 300
  301 RWIIDASDKR RDSHFAQRVA NELVAVAEGR SGVWDRREQV HKLGVAVNFF MLWDSLDFTG 360
  361 MAEWLTNPLQ PSSPRLSNEF PPPVRHKSPI SMCRRRLEAG SVPSLHADPH SAPDFLFSTV 420
  421 SSNAVGRSVA RFASATGASS HDLDVIRSSS IELQDYPVTP ASRPRQSHSE SRLRSSPQSD 480
  481 QATTPGFQSW TREASYSEKP VRLWVEALRR RAQRPRDVDA KMKFSHSIQF NAVPEWSSYY 540
  541 IAYSNLKKLI YSLEQQAHRG AGQALVDVES APLLDGETLD PDTIFQRALS AELEKICTFY 600
  601 REKEAEILEE MDQVVKDAEE YAAQADGVNV DPMSENMHKA RTTSTSSRPR TGSIYRDFPL 660
  661 GSDRRRSTVS ETAAEDDYDD DADSDDDRPL VEHERSQSHG SGLDDSHMDG TRDSAFMGDS 720
  721 RLLGFNSHNR IASQVEQFGD PRVLDLYNSG LSLKKRAVNA YVSLCGLKSY IQLNKTGFSK 780
  781 ALKKYDKTLD RSLRREYMNS TVSPAYPFTD ATMEKIDDRI HKIEEVYANV VTGRNLQLAR 840
  841 RELRLHLREH VVWERNTVWR EMIGIERKAQ AANVGIRRTL LGGDEDPATA RRQGDELAKE 900
  901 AKEFRTPLGV FHPPEWLCSL SFGTLIFILA VFVTLLTVPV MDKPEQQNCL AMLVFVSLLW 960
  961 ATEVIPLFVT SLLIPFLVVL LRIMKSEDKP HHRLGPKEAT SVAFGAMWTP VIMLLLGGFT1020
 1021 IAAALSKYDI ARRMAMFVLS KAGSNPRVVL LTNMFVSMFL SMWISNVASP VLCYSIIQPL1080
 1081 LRNLPPDSNF AKALVLGIAL AANVGGAASP IASPQNIIAL QNMYPSISWG TWFFVALPVC1140
 1141 IISILLIWAL LLFTFHPSRG TTLVPIRPIR EKFTGVQWFI SAVTLGTIIL WCVSHQLEHI1200
 1201 FGDMGVIAII PMVLFFGTGI LNKEDFNNFL WTIIILAAGG LCLGKAVTSS GLLHALANSI1260
 1261 RTRVEDLSLY GVLIVFSALI LVVATFISHT VAALIMLPLV RQIGVGMADP HPNLLVMASA1320
 1321 LMCSVAMALP TSGFPNMTAI MTEVPQTGQR YLQVRHFFTR GIPSSLMSFA VIVTLGYGLM1380
 1381 YIAGL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle