YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114193817, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSAQSMTI ESYPDEALST SYAPTPSEET ALVRDRRRRH SFHTARKLSC DYDADAVFLR  60
   61 VELFLAEMER RMHWIEEYRQ AHMVQIDSSL RRGYATLEAV RDSCSFASGE LMGGGKKRAK 120
  121 ILVETLEDRY KDALATKETL EQKAQVGIRL MESFLTELES RAHAVRDRGI YGTLDDGWKA 180
  181 VDSKLVQARE AVDEGMERAK EALRESIDRA IVLAQEKRLI TYADLPHPWR INPHILQGYR 240
  241 FTHSKVECFT SMFTFSNELV NIWSHLIGLF IVLSVAFYFY PLNPNFHLST KTDVFVAAVF 300
  301 FFAACKCLVC STLWHTMNSI ANQGLMERFA CVDYTGISML VAASIVTTEY TAFYCEPVSR 360
  361 WTYILATMSL GIGGVVLPWH PTFNRADFAW VRVAFYVTLA LTGFAPLAQL TYTRGFEWCL 420
  421 YFYAPVVKSI LVYFAGACIY ASQVPERWRP GLFDYVGGSH NIWHFAVLGG ILFHYCAMQD 480
  481 LFAVAFQRAQ GECPNLSA

Type	Start	End	Confidence
Cytoplasmic	1	258	0.68
Transmembrane Helix	259	282	0.87
Non-Cytoplasmic	283	293	0.63
Transmembrane Helix	294	316	0.90
Cytoplasmic	317	329	0.61
Transmembrane Helix	330	353	0.81
Non-Cytoplasmic	354	360	0.59
Transmembrane Helix	361	381	0.93
Cytoplasmic	382	387	0.61
Transmembrane Helix	388	412	0.84
Non-Cytoplasmic	413	419	0.61
Transmembrane Helix	420	442	0.84
Cytoplasmic	443	459	0.52
Transmembrane Helix	460	478	0.86
Non-Cytoplasmic	479	498	0.52