YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115396114, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSLPSWKD RTQQHFGKLQ IQVPWRSIQL LVPHRMRRKI RSKLRSRISP TSSISSLQTS  60
   61 FSPVDTLRSL QSHRWTLYDF QYLLLLIVGI FSLSVIEVPG PLAKTAVFSL LLVSLLLPIT 120
  121 RQFFLPFLPI AGWLIFFYAC QFIPSDWRPA IWVRVLPALE NILYGANISN ILSAHQNVVL 180
  181 DVLAWLPYGI CHYGAPFVVS LLLFIFGPPG TVPLFARTFG YISMTAVTIQ LVFPCSPPWY 240
  241 ENLYGLAPAD YSMEGNAAGL KRIDKLFGID LYTSGFKQSP VVFGAFPSLH AADSTLAALF 300
  301 MSQVFPRLKP LFVTYTLWMW WATMYLSHHY AVDLVSGGLL ATTAFYFAKT RFMPRVQNDK 360
  361 MFRWDYDYVE YGDATREYGY DLASFGGEFN MDSDEWTVGS SSSVSSGSLS PVDDHYTWEH 420
  421 ESLASPATDI ESGRHLLSPL S

Type	Start	End	Confidence
Cytoplasmic	1	77	0.85
Transmembrane Helix	78	103	0.79
Non-Cytoplasmic	104	118	0.48
Transmembrane Helix	119	143	0.78
Cytoplasmic	144	150	0.53
Transmembrane Helix	151	168	0.51
Non-Cytoplasmic	169	184	0.69
Transmembrane Helix	185	207	0.84
Cytoplasmic	208	217	0.58
Transmembrane Helix	218	236	0.72
Non-Cytoplasmic	237	325	0.56
Transmembrane Helix	326	348	0.85
Cytoplasmic	349	441	0.86