YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114193242, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	74	0.91
Transmembrane Helix	75	97	0.91
Cytoplasmic	98	107	0.73
Transmembrane Helix	108	127	0.89
Non-Cytoplasmic	128	136	0.85
Transmembrane Helix	137	157	0.93
Cytoplasmic	158	168	0.80
Transmembrane Helix	169	187	0.90
Non-Cytoplasmic	188	206	0.74
Transmembrane Helix	207	222	0.58
Cytoplasmic	223	275	0.67
Transmembrane Helix	276	298	0.79
Non-Cytoplasmic	299	302	0.54
Transmembrane Helix	303	324	0.76
Cytoplasmic	325	333	0.50
Transmembrane Helix	334	348	0.59
Non-Cytoplasmic	349	354	0.71
Transmembrane Helix	355	375	0.91
Cytoplasmic	376	385	0.82
Transmembrane Helix	386	404	0.91
Non-Cytoplasmic	405	418	0.82
Transmembrane Helix	419	437	0.87
Cytoplasmic	438	454	0.91
Transmembrane Helix	455	476	0.90
Non-Cytoplasmic	477	494	0.92
Transmembrane Helix	495	517	0.90
Cytoplasmic	518	523	0.72
Transmembrane Helix	524	544	0.87
Non-Cytoplasmic	545	548	0.67
Transmembrane Helix	549	568	0.91
Cytoplasmic	569	575	0.79
Transmembrane Helix	576	599	0.85
Non-Cytoplasmic	600	610	0.86
Transmembrane Helix	611	630	0.94
Cytoplasmic	631	649	0.89
Transmembrane Helix	650	668	0.96
Non-Cytoplasmic	669	949	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKYKDGDA VVAFNGKWVS WAHTAVAYTA FFSALVVGMY LHFHKIVQNE HYGYPDEWFP  60
   61 SVSATIGDRY PERSFFQVFI AITSGPRFAL VFLWYVLTAR PNSTLPKVVA GVGLFRTFTC 120
  121 GGWTYVTSTD DHDWHDIFMI SYLVATLPWT LGCLALSPNN RRAVKYRKVL ASLFFGTLVP 180
  181 LIYYFIQHKV HKVPGAYTRY AFFEWSLILF DVGFDAVTAL DFEAFEIVVR DVKGVSRGQL 240
  241 KTTADSVLEK EKGKPVGNTF GEGFFWSEII DAAADAYNGF VLWSLWTALP VLVWYFPLWY 300
  301 MGISGYEVAI LAYTAPALLA IPGLKTLATR NPRILHLLSI SGLLAYKVQD PANRLFLIVF 360
  361 SVVCGCLSWT ATLYAERANG SRLESRIFAW GLGLIMSSIA KFACRTNNPV WPIMHAENGG 420
  421 WNKLGLLLAV LAALRSYRRA PTSGGDYFPT TGRKGSPILA ALGVGGLVFA MHSMLSDSST 480
  481 MISWVWDGYP VRGPIAVPHG AYTIFVMGAG LVYGLFYPAA AGSWTAFGIG SLGAAMVTCY 540
  541 SHWTGFYGGL ILAFYLLAVA PVLLSSAVRH SPATTFGIGM FLYMFLVLFH VWVVAYAFVP 600
  601 GGPLVREHTD WLMTVTMLSI GAGVFSAGVT NSSTPKSKTI SPSGRRQRSY YTYVLVALQL 660
  661 LSISVAYLRF PTNDYVPYHK DEKLATMGIW TVHFGLDNDM WASERRMKNV IEELELDVIG 720
  721 LLESDNQRII MGNRDITQSL AEDLGMYADF GPGPNKHTWG SALLSKFPIV NSTHHLLPSP 780
  781 VGELAPAIHA TLDMYGELVD VVVFHSGQEE DPEDRRLQSE YLAKLMGSST RPLVLLSYLV 840
  841 TKPLEGNYNT YVSELSGMKD IDPTDWDRWC EYILYKKLRK VGYARVSRDS ITDTEIQVGK 900
  901 FAIGEPESEN DMFIPEEMVP EGRRFPSLFR GQGVRGHRYH VFDEPRYFN