YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114192813, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYILDQLARL LDRPFFPWKN VLVGFSLGQF VLEGLLSFRQ YKVLQRTKPP QVLEKEVSQE  60
   61 VFDQSQSYGR AKAKFSFFSG LYGQIQNLAF IYGDVLPKLW GASGLLLLRY FPSRFQGEIT 120
  121 QTLVFFFGFN LISTILSLPV SYYNTFVLEE KFGFNKQTVK LWITDMLKGQ MLGIVLGTPI 180
  181 ISAVLKIVQK TGNSFFYYLW LFGVFVQVFA ITIYPIVILP LFNKLSPLEP GELKTGVENL 240
  241 AKKLEFPLHE LYVIDGSKRS AHSNAYFYGL PWKKHIVIYD TLIEKSEPEE VVAVLSHELG 300
  301 HWSLSHTTKL FGIAQSHMFY IFALFSVFVN NKSLYQSFGF VKEQPIMIGF LLFSDALAPM 360
  361 DAVVKLLMNI LSRKFEFEAD AFALKLGYQE KLASSLLKLQ IQNLSTMDAD WMYASYHYSH 420
  421 PILSERLKAL GWKGGKVTDL KAEDSEKPVK AADREL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.70
Transmembrane Helix	16	37	0.64
Non-Cytoplasmic	38	87	0.56
Transmembrane Helix	88	111	0.55
Cytoplasmic	112	121	0.59
Transmembrane Helix	122	143	0.88
Non-Cytoplasmic	144	166	0.65
Transmembrane Helix	167	188	0.85
Cytoplasmic	189	195	0.59
Transmembrane Helix	196	218	0.93
Non-Cytoplasmic	219	345	0.59
Transmembrane Helix	346	364	0.48
Cytoplasmic	365	456	0.50