YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115397897, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILLRSSLRR LGPSRDVSLL CSQCLHRRVH PPPSAVRSFL SSARWQSGVV DTQSPSSALN  60
   61 KTYFSANSAT KNSLDKHGVS SSVPPNSSAA TAQTENSSPP TAADTNQTEL PHRRRKRLKE 120
  121 ESARNKSDDD HVIPPDASAQ LSTMSSSLPT TSLRRKLAAF LALTKPRLSV LIVLSTTSAY 180
  181 GMYPISSLLA LDPSIAPLPT LSTSTLTFLY LTAGTFLSSC SANTLNMVFE PKYDAQMSRT 240
  241 RNRPLVRGLV SRPAAVLFAI ATAVAGLGLL YFGTNPTVTA LSAGNIALYA FVYTPMKRIH 300
  301 VINTWVGAIV GGIPPLMGWV AAAGQTATTG HDTWRDMLFS EDSIGGWLLG GILFAWQFPH 360
  361 FNALSHTIRE EYKAAGYKML AWTNPARNAR VALRYSVLMF PLSIGLWWVG VVGHGFLVGS 420
  421 TVANGWLVKE AYRFWKHQGA NGTARGLFWA SIWQLPILLV GGLVTKKGLW DGVWRNAFGQ 480
  481 PEEDEDDYLY YDEEEADERE STAQSSASAS NSASRRTTST A

Type	Start	End	Confidence
Cytoplasmic	1	167	0.95
Transmembrane Helix	168	186	0.86
Non-Cytoplasmic	187	205	0.83
Transmembrane Helix	206	229	0.88
Cytoplasmic	230	248	0.95
Transmembrane Helix	249	270	0.93
Non-Cytoplasmic	271	276	0.69
Transmembrane Helix	277	293	0.96
Cytoplasmic	294	300	0.79
Transmembrane Helix	301	323	0.90
Non-Cytoplasmic	324	342	0.90
Transmembrane Helix	343	364	0.87
Cytoplasmic	365	396	0.90
Transmembrane Helix	397	418	0.87
Non-Cytoplasmic	419	446	0.88
Transmembrane Helix	447	465	0.92
Cytoplasmic	466	521	0.94