YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115397603, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARTRRQKA ALAAQSSGDE SPEVNGTAQK SSPKSTKSTS RVDEAKENVY LFMPNLIGYC  60
   61 RVVLTIASLY YMPLHPRTCS ILYSVSCLLD ALDGYAARYY NQSTTFGAVL DMVTDRCTTA 120
  121 CLLVFLSSAW PRWAIIFQGL IALDMASHYM HMYATLSMGG AGQSHKKIEA SRSWILYQYY 180
  181 HSKTVLFICC ALNEAFFIGL YLLSFSSPAL SPSLLQEPAQ ASVQPGTSPT SIFTSPWSAG 240
  241 ALEMARANKI DSWWPWVVTG ISFPVMALKQ IINVVQLVNA SNWLVEGDIA NRKAMRNGKN 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	119	0.73
Transmembrane Helix	120	152	0.60
Non-Cytoplasmic	153	183	0.41
Transmembrane Helix	184	205	0.90
Cytoplasmic	206	252	0.45
Transmembrane Helix	253	272	0.54
Non-Cytoplasmic	273	300	0.65