YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114192581, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRVLPTFT LAEVETHNNA KSCYVTIGSK VYDITSFVDD HPGGGDLILE YAGKDVKDIL  60
   61 RDPVSHEHSE AAYEILEESL VGFLATDSNG TANASNVNGS AHKSEQVFAT TGMSCEEDLT 120
  121 VETDFSKDYQ TYKFLDLNKP LLMQLWNSGF SKEFYLEQIH RPRHYRGGES APLFGNFLEP 180
  181 LSKTAWYVVP IIWLPPVAYG TFVGFTELGN VAAAYWVFGV FLWTLIEYVM HRFLFHIDRF 240
  241 LPDNRVGLTL HFLLHGIHHY LPMDKYRLVM PPALFVVLAT PFWKLAHTVF AYNWYAALTV 300
  301 YCGGVFGYIC YDMTHYFLHH RNLPLYYKQL KKYHLQHHFA DFDNGFGVTS RFWDVIFGTE 360
  361 LQMPTPKVAK VQ

Type	Start	End	Confidence
Cytoplasmic	1	183	0.95
Transmembrane Helix	184	205	0.85
Non-Cytoplasmic	206	211	0.81
Transmembrane Helix	212	231	0.93
Cytoplasmic	232	267	0.75
Transmembrane Helix	268	286	0.79
Non-Cytoplasmic	287	293	0.63
Transmembrane Helix	294	311	0.93
Cytoplasmic	312	372	0.85