YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115399410, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.95
Transmembrane Helix	60	82	0.89
Non-Cytoplasmic	83	90	0.75
Transmembrane Helix	91	111	0.83
Cytoplasmic	112	132	0.76
Transmembrane Helix	133	153	0.76
Non-Cytoplasmic	154	160	0.72
Transmembrane Helix	161	183	0.76
Cytoplasmic	184	190	0.68
Transmembrane Helix	191	211	0.93
Non-Cytoplasmic	212	218	0.86
Transmembrane Helix	219	241	0.88
Cytoplasmic	242	250	0.84
Transmembrane Helix	251	272	0.81
Non-Cytoplasmic	273	291	0.87
Transmembrane Helix	292	314	0.85
Cytoplasmic	315	494	0.90
Transmembrane Helix	495	517	0.68
Non-Cytoplasmic	518	525	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKGANGTPD AGLRSLNHYR NQLPSWRYWP RQKLLPLIRY ETPYLAWCQE KVRTPALDSY  60
   61 FAFTANLGTH TFFMVFLPIL FWCGYPNLGR GMVDLLASGV FFSGFIKDLL CLPRPLSPPL 120
  121 QRITMSGSAA LEYGFPSTHS TNAVSVAVYV LALLNAPDST FTSGVNVLLQ GITYLYVGSI 180
  181 VLGRLYCGMH GFFDVIVGCF LGTVIAAVHY LNDAEIHEFA HSGTGMQVMV MVLIIVALVR 240
  241 IHPEPADDCP CFDDSVAFAG VLLGAQVGYW HASQREAVGD YRVNLNYRLE HLGLFKMSLR 300
  301 LISGVLLLFV WRAISKPFLL RMLPPVFRGL EKVGLILPRR FFTKASQYTK VPAHLKDKEI 360
  361 LPSFSDIPSI LTGIRHPRRR AISVGPQSEA DAYETLAYRE KRRRESISSN SASPDVNHGS 420
  421 PSEGPTQKLS RKQSKLHEYE HMMGTGSPRI ATAVDAGAGA PLLTEPFPAL EPEEPGEEEV 480
  481 FAQIKRPRVR YDVEVITKLV VYSGIAWIVV EGAPILFDMV GLVPR