YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114191722, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIALEIWDT FIGDRLYSAL VPLSLSPSIS LPDFTNAANS TLSLFGASYP YAYKPATQLF  60
   61 YLEPSKYAYM SAWPRNNIYR QFLSFFLIVW IFGIITYFIS ATLSYIFIWD KTTVKHPKFL 120
  121 KNQIPMEIKQ TMESMPIMSL LTAPFLVAEV RGYAKLYDTF AEEPFPYYSV IQFPLFIAFT 180
  181 DLCIYWIHRG LHHPLIYKTL HKPHHKWIMP SPFASHAFHP LDGWSQSVPY HVFPFIFPLQ 240
  241 KLAYVFLFGF INLWTVLIHD GEYVANSPVI NGAACHTMHH LYFNYNYGQF TTLWDRLGGS 300
  301 YRKPNEELFR RETKMTEDEW KRQTKEMETI LKDVEGDDDR KYLAETETKK DL

Type	Start	End	Confidence
Cytoplasmic	1	81	0.66
Transmembrane Helix	82	107	0.82
Non-Cytoplasmic	108	167	0.61
Transmembrane Helix	168	188	0.88
Cytoplasmic	189	206	0.69
Transmembrane Helix	207	221	0.52
Non-Cytoplasmic	222	236	0.58
Transmembrane Helix	237	258	0.71
Cytoplasmic	259	352	0.77