YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114191669, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPTTSALLR HAQLRQRLGQ KSLSTTRHIH IRMQPRCANW PHFANNNALC RPTNTNLRTI  60
   61 PPKPVALAKY SSSSPAPSNQ PSTTAFLNPV THYRPPQTGL IASLPQSWIP YAELLRLDKP 120
  121 AGTYYLFFPC AFSTLLAAPM ASSTPLEVLW TTGLFFTGAL IMRGAGCAIN DLWDRNLDPH 180
  181 VERTKFRPIA RGAISPRNAV IFTGFNLLAG LGVLLQFPFQ CLYYGIPSLL LVTTYPLAKR 240
  241 VTYYPQAVLG LTFSWGAIMG FPALGIDLLS NHDALGAAAA LYSSCVAWTV LYDMIYAHMD 300
  301 IKDDVAAGIK SIALRHEHNT KTVLSGLAAV QVGLLAAAGV AAGAGPIFFV GSCGSAALTL 360
  361 GTMIWKVQLK NVQNCWWWFK NGLLYIVYAD KAFRPLSRPS YILPSRPAAF QLPSILHARL 420
  421 LSSETRSAID KAIASAPVVL FMKGTPETPQ CGFSRASIQI LGLQGVDPKK FVAFNVLEDP 480
  481 ELREGIKEYS DWPTIPQLYL DKEFVGGCDI LMSMHQNGDL AKMLEEKGVL VAAD

Type	Start	End	Confidence
Cytoplasmic	1	121	0.98
Transmembrane Helix	122	142	0.91
Non-Cytoplasmic	143	148	0.80
Transmembrane Helix	149	173	0.83
Cytoplasmic	174	193	0.93
Transmembrane Helix	194	215	0.89
Non-Cytoplasmic	216	220	0.70
Transmembrane Helix	221	238	0.84
Cytoplasmic	239	246	0.72
Transmembrane Helix	247	266	0.93
Non-Cytoplasmic	267	273	0.72
Transmembrane Helix	274	296	0.83
Cytoplasmic	297	319	0.85
Transmembrane Helix	320	341	0.83
Non-Cytoplasmic	342	346	0.63
Transmembrane Helix	347	367	0.87
Cytoplasmic	368	534	0.76