YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115400185, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.97
Transmembrane Helix	73	90	0.89
Non-Cytoplasmic	91	113	0.80
Transmembrane Helix	114	134	0.88
Cytoplasmic	135	143	0.77
Transmembrane Helix	144	163	0.92
Non-Cytoplasmic	164	172	0.66
Transmembrane Helix	173	194	0.89
Cytoplasmic	195	203	0.90
Transmembrane Helix	204	226	0.91
Non-Cytoplasmic	227	237	0.82
Transmembrane Helix	238	259	0.89
Cytoplasmic	260	303	0.94
Transmembrane Helix	304	327	0.85
Non-Cytoplasmic	328	338	0.78
Transmembrane Helix	339	360	0.90
Cytoplasmic	361	368	0.90
Transmembrane Helix	369	390	0.93
Non-Cytoplasmic	391	397	0.90
Transmembrane Helix	398	420	0.88
Cytoplasmic	421	428	0.87
Transmembrane Helix	429	450	0.92
Non-Cytoplasmic	451	457	0.87
Transmembrane Helix	458	479	0.94
Cytoplasmic	480	522	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGSRLGAF AGSKDDEVTE TPTASHSENR TVDPSWKAAK SKDGDTAMAL FDDPDELHEP  60
   61 VDPAEARRVL WKIDFMILPY LAVCYAFFYI DKTTLSYAAI FGIVEDLELH GTQYSWLSSI 120
  121 FYFGFLAWAF PTNFMLQRFP IGKYLGINIF MWGVFLMIQA ACHNFTTLAV LRALGGAAEA 180
  181 CADPAFMLIT SMWYTRREQP VRMGLWYTAN GFGIALGGLL GYGIGHIRGA LPSWKYEFIV 240
  241 IGALCSTWGI VMFIFLPDSP VTAPGLTKRE RRIAVERLRE NQTGVENKHL KPAQILEAFC 300
  301 DYKLYFFFVL GMVCNIPNGG ISNFGTIIIK GFGFSTLVTT LMQVPYGVLI AISILICVYL 360
  361 NDRFENRRCV FILIFLLPNI AGAFGLRFVP LDQKVGRLIC YYLTGPYNAA FVLILSMQVA 420
  421 NTAGHTKKVV TNAVLFLGYC TGNIAGPFFY KDDQNLGIWS MIVSHLIEAV LISVLGLLLR 480
  481 WENKKRDRIQ SQMEGGLEGR DLGATAFMDL TDRENLNFRY IY