YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115400139, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISQKVAQQS LRRLAVQQPY AMRWSMMNAA SPAAIALGRT VQRRQAATSA NTEDPTKILA  60
   61 KQRLNRPVSP HLTIYRPQIT WYASAFNRIT GVALSGGMYV FATAYLAAPL FGWHLESASL 120
  121 AAAFAALPIA AKVLLKGTIA FPFAFHCMNG VRHLVWDMGR GITNQQVIKS GWTVVGLSAL 180
  181 SAVVLALL

Type	Start	End	Confidence
Cytoplasmic	1	85	0.79
Transmembrane Helix	86	108	0.84
Non-Cytoplasmic	109	119	0.58
Transmembrane Helix	120	147	0.70
Cytoplasmic	148	166	0.74
Transmembrane Helix	167	187	0.83
Non-Cytoplasmic	188	188	0.75