YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115400017, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPPPSNLP LAERLKALAQ TLQHVTLLVS VFRYLLSYVT FNYYSSTAQV SYRLAFLSAA  60
   61 VTYGIVVYKG HIARGRLQGS VPSIALKLAG DENVQYLGMA LVWLYSRQIP LALLPFSVYS 120
  121 VFHVATYSRA HLIPTLQPPA QAAASPTSPG SPKPAPKQSA LAETIGRFVK QYYDASMDLV 180
  181 AGLEMALLLR LALSIVTFSK GSIVLLFIYL AFFRARYTQS SFVQQAVRHF TARVDATVSH 240
  241 QSTPPAVRQG WDTFKGFVRQ GYEATDMSRF TSGAAKKPQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	41	0.78
Non-Cytoplasmic	42	49	0.74
Transmembrane Helix	50	72	0.79
Cytoplasmic	73	108	0.79
Transmembrane Helix	109	127	0.61
Non-Cytoplasmic	128	186	0.58
Transmembrane Helix	187	213	0.83
Cytoplasmic	214	279	0.59