YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115386686, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSSSLKPI VPSASLLRFL RSQSDSLLFF TANSSTCGGP VQSRPPCALS SGNYSIWTEI  60
   61 TPARRHATLE AGFLPVPSFP RRNTLRCRTS SGQSTFTKVD LYPKIQNTRA SSTKSRPLLR 120
  121 RILDFRRGKA AADAKLNRAG GPALIDDGAD AGLNYKRSLA AKAPNELRLR CTEFDINGNV 180
  181 TLVNGEFKKS ELIAKYGLLP RDLRKIDSST LPHILVRPSA ILINLLHLRV LIKADRVLVF 240
  241 DAYGSTDSYM QSLFVYDLEG KLRQKQSQGA GALPYEFRAL EAVLISVTSG LEEEFNGVRE 300
  301 PVVRVLRALE EDIDRDKLRH LLIYSKRLGT FEQKARLVRD AIDDLLEADD DLATMYLTES 360
  361 ANGFQREEHD HQEVEMLLES YHKVCDEIVQ ASGNLVTSIR NTEEVVKAIL DANRNSLMLL 420
  421 DLKFSIGTLG LATGTLFSAL YGMNLKNFIE ESDLGFGAVS VTCFAITAVV CVYGLAKLRK 480
  481 LQRVRMWGEA GVGGAPIVPL PTRSGALAGH RSNWRADAIE PVWGSLPGEG RTERIKRLRD 540
  541 GAAAAAATRS VASEPTAHRA SMKHSPGMGR AEQYASEGAA ANPGGSL

Type	Start	End	Confidence
Signal Peptide	1	24	0.51
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	213	0.60
Transmembrane Helix	214	228	0.27
Cytoplasmic	229	421	0.65
Transmembrane Helix	422	443	0.73
Non-Cytoplasmic	444	453	0.79
Transmembrane Helix	454	476	0.94
Cytoplasmic	477	587	0.81