YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115386232, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSDNRLFR WSKPEWLNNS AVRNAGVYTS GALFSLGFFF LVDAAAFSHS SRNGSFVHVK  60
   61 FVDWIPGICS ALGMLVINSI EKSRLQADSF SYSGSGVAWK ARFVLFLGFA LLAGGLAGSV 120
  121 TVMVLKYLIK QYPMQTLYFG IANVIANGLV MLSSVVLWIS QNIEDDYTYN LALMAWDVLA 180
  181 SVA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	42	0.88
Non-Cytoplasmic	43	60	0.69
Transmembrane Helix	61	80	0.82
Cytoplasmic	81	100	0.70
Transmembrane Helix	101	125	0.87
Non-Cytoplasmic	126	136	0.63
Transmembrane Helix	137	159	0.90
Cytoplasmic	160	183	0.71