YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114190594, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPLPDVQS IWDCTYFNRT VLPFLPQLTT LPERLQVVAA AKDAQGLKEI YLSTNPFVSA  60
   61 LGLCLALSAF FLVFSELNRN WSQVDRFWSI LPAVYNVHFA VWARMSGLRT EALDTIAALA 120
  121 VLWSIRLTFN YWRKGGYKIG SEDYRWEVVR AKVNNRFIFF LFNVVFISLT QSLLLLLITA 180
  181 PTYNFLLLSR LPHMKSFELP DLIFSRVAFF FLIIEYFADQ QQWAFHCAKH EYQKSARISG 240
  241 QYKSQFTPED LERGFVVSGL WSLSRHPNFV AEQAIWLTLY LWNCYRTETY LQWTGLGVLG 300
  301 YLLIFQGSVR LTEAISASKY PEYSEYQARV GRFIPRFSVK PKYKGGKKKT RPAKESVGEG 360
  361 EQTAVEKKSQ

Type	Start	End	Confidence
Cytoplasmic	1	51	0.75
Transmembrane Helix	52	74	0.86
Non-Cytoplasmic	75	111	0.49
Transmembrane Helix	112	129	0.73
Cytoplasmic	130	156	0.70
Transmembrane Helix	157	180	0.86
Non-Cytoplasmic	181	289	0.56
Transmembrane Helix	290	309	0.39
Cytoplasmic	310	370	0.55