YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHE9_ASPTN
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSLPLLLRQ SLRSTGALSR SAHRPIRAPP LPSHLLRLPT AHPRPFSVCL QCQFRTQSAS  60
   61 YPPNKESDKP LDTETPSKHP DSTASFLEES LKTQAEAGTP ADSTTTTTTT TTSPPPQPTP 120
  121 NEPKTADSSL RDTLPSYLDN RRSQFSKQFT TMMDNLQSNI FVAGQRLNDL TGYSEIEALK 180
  181 KEIHTQEDRL RAARLHVRNA KEAYASAINR RSASQREVNE LLQRKHAWSP VDLERFTHLY 240
  241 RNDHTNEVAE NEAQEALTAA EREAEEAAAQ LSKSILSRYH EEQVWSDKIR RMSTWGTWGL 300
  301 MGVNVLLFLV FQIAVEPWRR KRLVKGFEEK VIEAIEKERE MNHVEILSPT AAAATAGAVA 360
  361 PVEAAGEDAA PAPVEEETTS DGASVVEDTT GGVVEDRADL AHESYKAQLP SLPSTLSVDS 420
  421 WRQYLHDLFS ERSMIITQRD LSSVALQSAA AGAAVMGLVI ALIRPR

Type	Start	End	Confidence
Non-Cytoplasmic	1	294	0.86
Transmembrane Helix	295	315	0.91
Cytoplasmic	316	442	0.79
Transmembrane Helix	443	463	0.92
Non-Cytoplasmic	464	466	0.66