YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114189669, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEYTPDAIV NRDEPIPLIS PGHHGSKQAN ASRPTTGHKR FPSGVGRSLQ DRLFTKLLEQ  60
   61 VVPTDNVNDD TVFVGDKPAA DPKRPAFSLP LMANNFRRFN ARIGVVFHFQ NQVERLLSWK 120
  121 KPSHTYSFLF VYSFVCLDPH LLVILPLACF LLFVMVPAFL ARHPPPPSTS TSSITPYYSY 180
  181 QGPALAPART IKPASETSKD FFRNMRDLQN CMADFSDLHD ATVSVFAPLT NFSNEKLSSS 240
  241 VFLLCMFTTA LMFLTAHLMP WRYILLVGGN AAILSSHPRL RELFQNISID LAGESAPEKL 300
  301 PQKEQVPDML GLPSSPSAAM SLMGSIADIS LDTYSEEREV EIFEIQYRSL APYSESVWDH 360
  361 FLFSPMPYDP LSPSRIAGDR PKGCRFFEDV QPPRGWAWKS KKWELDLDCR SGF

Type	Start	End	Confidence
Cytoplasmic	1	127	0.83
Transmembrane Helix	128	161	0.70
Non-Cytoplasmic	162	236	0.76
Transmembrane Helix	237	259	0.79
Cytoplasmic	260	413	0.64