YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114189504, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNVFAVPI FFICFRECVE TSIIVSVLLS FLHQTLGADS DAATRKKLVK QVWWGVAIGL  60
   61 VICLIIGGGM IGAFYGYGKD HFANTEDLWE GIFSLIASII ITIMGAALLR VNKLREKWRL 120
  121 KLAQALEEKT VPTGKWSDRF KHWAQKYFMF VLPFITVLRE GLEAVVFIGG VSLSFPASAF 180
  181 PLPVITGILA GIAVGYVIYR GGNQTSLQIF LVISTCLLYL VAAGLCSRGV WYLENNTWNH 240
  241 LIGGDAAETG AGPGSYDIRQ SVWHVNCCSP LVNGGGGWGI FNAILGWTNS ATYGSVISYN 300
  301 LYWLVVIVWF VMMGFREKRG SWPLVDPLFR RSKRASQGQS EETISSGGVG VLMNSKPSAD 360
  361 GATRLQTTED GGLSPLDK

Type	Start	End	Confidence
Cytoplasmic	1	51	0.72
Transmembrane Helix	52	75	0.93
Non-Cytoplasmic	76	90	0.90
Transmembrane Helix	91	111	0.95
Cytoplasmic	112	146	0.95
Transmembrane Helix	147	169	0.84
Non-Cytoplasmic	170	178	0.71
Transmembrane Helix	179	199	0.95
Cytoplasmic	200	208	0.82
Transmembrane Helix	209	231	0.92
Non-Cytoplasmic	232	290	0.84
Transmembrane Helix	291	313	0.87
Cytoplasmic	314	378	0.88