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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115402647, gi...
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSFTSFLLV YCLGGLTFIP LVLSLILLHA YLTFPSRSPA DQTPPTSDPA RDPIRRPSDD  60
   61 QFSLKSGTDE LAEKFHRTHE SDVAAGYFAV CREYVPGGVN GKPPERTTPA GEVIAAESPS 120
  121 VYQAMYRSLF DRKQAPTIEP SKNGAKNSKK ARNVFYIVLR HGHLMLYDDA NQVEVRYVIS 180
  181 LAHHDVTIHS GGEGEIPEGE LWLKRNAICL SRRLDSLADL GGPTPPFFLF SENLSEKEDF 240
  241 YFAMLQNQSR MWKSPDAPPK HQSFDVKHII TLVQRLHSSE EQLQTRWINA VLGRLFLALY 300
  301 RTPQMEEFIR QKITKKISRV NKPNFISRIG LRKIDMGEGA PFIINPRLKD LTVDGNCCVE 360
  361 TDIQYAGNFR VEISATVRID LGQRFKAREV DIVLAVVLKK LEGHLLIRFK PPPSNRAWIS 420
  421 FETMPNMVMD IEPIVSSKQI TYGVILRAIE SRIREVVAET LVLPFWDDIP FLDTFPDRFR 480
  481 GGIWEHDQPE PTSSENIPDE SGTQPKPQGA KIDSADGLRA NDERTRSAPA LAEPLPTGVK 540
  541 SRKGSKSTLG EVERNNSSGV SSGVEKFGSS PPRAIRSKTF ADVADPVVTA DNVNIDKVVY 600
  601 ERKSEEKSSA TSAMIEISSR SPPGSPNKTP GGSPPVESPI TSDGASRSRE PSITESIESV 660
  661 GEFSNGLPTR PPSVHQASDS SLHYRLSGTN SSSASVNTTD RPRRRTTLEN FTRSIASSSE 720
  721 YSNTKSQVSL TLNSATSAAK KWSWNVFGKG DQSTGSDSSR PAGTPEEPIG RGHPLPPPGT 780
  781 PLPYPEKFKK NSGPSVRRKP VPASRPNSSR SEENKPTGTR QSIPRRKPTS SSEELEGHRE 840
  841 ELLVVEAPLD SVPNSPVVDV APHDDVPASS SGCPVSHLSE TNGNQSNKSS SSERDEKTYD 900
  901 EEHRSQGFDL PKHGMEILSA TDGIIP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle