YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114188951, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.87
Transmembrane Helix	6	24	0.92
Non-Cytoplasmic	25	31	0.76
Transmembrane Helix	32	52	0.92
Cytoplasmic	53	63	0.85
Transmembrane Helix	64	83	0.89
Non-Cytoplasmic	84	139	0.92
Transmembrane Helix	140	162	0.81
Cytoplasmic	163	172	0.84
Transmembrane Helix	173	193	0.95
Non-Cytoplasmic	194	205	0.76
Transmembrane Helix	206	225	0.95
Cytoplasmic	226	235	0.75
Transmembrane Helix	236	250	0.68
Non-Cytoplasmic	251	293	0.60
Transmembrane Helix	294	319	0.77
Cytoplasmic	320	359	0.57
Transmembrane Helix	360	382	0.79
Non-Cytoplasmic	383	403	0.55
Transmembrane Helix	404	425	0.70
Cytoplasmic	426	441	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLFRVFSSV IFLTVTVSSI PLAFDVGGKT CGLAYSLSLA TFYFLFSLLR VTTPDRSWFR  60
   61 SSLIVLIRST QWLIIPILLI WSLNRFSIDT DNSSGWVERT FSGKRAQDSS IQEWLFGPDG 120
  121 LVESVTIGNW DKLLTWSTPV FQLVEGFCSL LVIQAAGQIT RWLVNRGGRS DSWMIGLLVL 180
  181 SASIISSAVY FLWRVLQFPE ISNVDAALIG VSITCAVILC AWGIGSGRGN PVESSLLFAY 240
  241 VVLCIYQIFT DYRPSHPIEQ VPSPAQSGEF PPLPPIIMNS YSTLRHALSL LPSIIHAAFN 300
  301 VITAVFSAVT PSVLISLMYR ICVLYASTRI IPAVRESGAR ALSQEASLDD SDAAGQFLGF 360
  361 LSYFSPSILI AVYTSLLMQH FASTSQAMGG SGEWWSTQGG GGGNLWRWIN LACTLALYAV 420
  421 ELWLGENDDL DSGLAGHWKT D