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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115438562, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHTIQIPIE DGSPDGPVPR TGNRRDSMRS SFSVVSDVEM ARNEVFDGPI SESIPSSVVS  60
   61 FSHRRNRNDS TVSFTYFQGE DDFVEWPDEH AVDAGSDLDE EAMIAQDTGS IDGSVRSSFK 120
  121 SRRPSYLRSA VEEPLLPQRR SSLESYGHDR KADSRLNQKV HIESEDLTIV IAGFSSTLTG 180
  181 LIIYFTLCVM TLGFAYLLFR WFPRWRVRLI GKPTPLRICQ WVAIEDQWNQ FNVYEVGSQQ 240
  241 YGRPLSTVFA DPESYFYDED NDPTVSFLRY IDYRYLRFFY HPVEDKFCLI SGWKDPLWTN 300
  301 AKVMRSGLDA DDRDSREQIF GTNLIDIQQK SIFQLLMDEA FHPFYIFQLA SLLLWSMDQY 360
  361 YYYAACIFII SVVSIGTTVL ETKATMSRLR EISLFECDIR VLRNGFWRSV PSQELVPGDV 420
  421 FEVSDPSLNQ VPCDCILLSG DCIVNESMLT GESVPVSKGP LTDDALGYLN LSAPSVHPNI 480
  481 AKHFLFSGTK VIRARRPQNV DDDEAIALAI VVRTGFLTTK GALVRSMLFP KPSGFKFYRD 540
  541 SFRYISVMAV IAILGFIASF VNFIRLGLSW HLIIVRALDL ITIVVPPALP ATLTIGTNFA 600
  601 LSRLKKHQIF CISPQRVNVG GKLDVICFDK TGTLTEDGLD VLGVRTVDRN HSLSELQSDL 660
  661 TLRSSPSSDS ATVHDISKQN KMIYAMATCH SLRVIDGELL GDPLDVKMFQ FTGWSYEEGG 720
  721 SHGTERQLSS FDTITPSVAR PPNQGGFLPD HGQDGSSSPI ELGILRNFEF VSQLRRASVV 780
  781 VRQFGDGGAS VFVKGAPESV KDICRPESLP HDFDDILSQY THKGYRVIAC ATKYESKLSW 840
  841 MKVQKMARED AECDLEFIGF IIFENKLKST SAGTITELRQ AGIRNIMCTG DNILTAVSVA 900
  901 RECGLLSKDE QCFVPHFVQG HHLDPEASLC WESIDDPTLK LDAKTLMPAV TSQGPDLSIP 960
  961 ATACDAQKYS LAVSGDVFRW IVDFGSDITL KRMLVRGNVF ARMSPDEKHE LVERLQSLDY1020
 1021 CCGFCGDGAN DCGALKAADV GISLSDAEAS VAAPFTSRQF DVSCVPTLIR EGRAALVTSF1080
 1081 CCFKYMSLYS AIQFSTVSLL YTSASNLGDF QFLFIDLVLI LPIAIFMGWT GPYPVLSRKR1140
 1141 PTADLVSRKV LTPLLGQILL YVLVQVVAYR AVQTQPWFLP PQIDLDNSNI ENSENTALFL1200
 1201 TSSFQYILAS VVLSVGPPFR MPMRSNKPFV LVIIIDLLIA VYMLFSPSET VKRVMQLTYM1260
 1261 STGFCWCILV LAIGSFLFSW AAERTIFPRL ARILGHIKTR LQPGRGKKRR QYKVLLEEMR1320
 1321 P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle