YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114188782, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRRITFIQR PDADFSLDQI SLSRSSLSVH GLDAAREDRV TFSFDELPPE VQVQGRGMYS  60
   61 GVLDLPGGLT SFITPPLLST RFASTAALQF HSILPSLQNL VTYLQHKACA SADEDCLRRV 120
  121 AGLLVADSVD VNYDSISHAL TISGYWSRTP PKGWTEEVRA REAGKGQIEV GLLGTEKAIE 180
  181 PEEIQMGGVL AVVGKEDELK PTLFSFPSRH HHLPDDAMYS ISFPEPTGLH PTMTIALSRA 240
  241 SLNAPPAPPD ATCALHAYLT LPSTVFGDKY QLSTTDSLFL DSHHLTALRA VAGETDLEAP 300
  301 DWVVPRWGSN WLLELATPQE PGLETEDWNV TIPLHLRYLK PSESGYRTAS IPWPVVFWAC 360
  361 SAEDGTKMGV NPFDRVNLGW EGLFGVRTMF YQLHPSTGRR DARLVEEIEV PVLRLTREGL 420
  421 FQTKNIELGT VAVIGLGLLW VLWKLSLAAR SSEPNTRKQK NQKRSKAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	427	0.95
Transmembrane Helix	428	448	0.79
Cytoplasmic	449	468	0.83