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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115443082, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGRPPGLH PAAGRDDDLL QLEESTPIYN SGQRPPVNDE HLLQQFNIDD SDTPQPRPSV  60
   61 SYDNFVGGPG ASHSGAHVAG SSLVPPAQSG AYLGDPYGGA DVSRTYSQTS GLSNYRRYSL 120
  121 DEYDDDRSIH DGYYDLDHDD HLTADHRVRQ AQERNSILGL GGGLMGRAKH MLGMGNEYSE 180
  181 MDLPLTEAGA RPARADSVGE GEDSSATPRP KKSKKPAFKF GRRKVDPSTL GPRIIALNNP 240
  241 PANAAHKFVD NHVSTAKYNI FTFLPKFLYE QFSKYANLFF LFTAVLQQIP NVSPTNRYTT 300
  301 IGPLLVVLLV SAIKELVEDY KRRVSDRSLN NSKTQVLKGS AFHEAKWVDV AVGDIVRVES 360
  361 EQPFPADLVL LASSEPEGLC YIETANLDGE TNLKIKQGIP ETSHLVSPAD LSRLSGRIRS 420
  421 EQPNSSLYTY EATLTMHAGG GEKELPLAPD QLLLRGATLR NTPWVHGIVV FTGHETKLMR 480
  481 NATATPIKRT AVERMVNVQI LMLVSILIAL SVISSVGDLI IRKTEADHLT YLDYGQTNAV 540
  541 KQFFLDIFTY WVLYSNLVPI SLFVTIEIVK YAQAFLINSD LDIYYDKTDT PATCRTSSLV 600
  601 EELGQIEYIF SDKTGTLTCN QMEFKQCSIA GVMYGEDIPE DRRATVEDDG SESGIHDFKK 660
  661 LRENLLSHPT ADAIHHFLVL LATCHTVIPE RSEAEPDKIR YQAASPDEGA LVEGAATLGY 720
  721 RFTNRKPRSV IFTVAGQEYE YELLAVCEFN STRKRMSTIF RCPDGKIRVY TKGADTVILE 780
  781 RLHADNPIVE STLQHLEEYA SEGLRTLCLA MREVPEDEFQ QWYQIFDKAA TTVSGNRAEE 840
  841 LDKAAELIEK DFYFLGATAI EDRLQDGVPD TIHTLQTAGI KIWVLTGDRQ ETAINIGMSC 900
  901 KLISEDMTLL IINEESAQAT RDNLTKKLQA VQSQGASGEI EALALIIDGR SLTFALEKDM 960
  961 EKLFLDLAVL CKAVVCCRVS PLQKALVVKL VKRHLKSLLL AIGDGANDVS MIQAAHVGVG1020
 1021 ISGVEGLQAA RSADVAIAQF RYLRKLLLVH GAWSYHRISR VILYSFYKNI ALYMTQFWYS1080
 1081 FQNAFSGQVI YESWTLSFYN VFFTVLPPFA MGICDQFISA RLLDRYPQLY GLGQKGMFFK1140
 1141 RHSFWSWIAN GFYHSLLLYI VSQLIFLWDL PMSDGKTAGH WVWGSCLYTA VLATVLGKAA1200
 1201 LITNIWTKWT FIAIPGSMVI WLAFLPAYGY AAPAIGFSFE YYGTIPVIFK LPQFYLMAVV1260
 1261 LPCLCLLRDY AWKYMKRMYY PQHYHHVQEI QKYNVQDYRP RMEQFQKAIR KVRQVQRMRK1320
 1321 QRGYAFSQAD EGGQMRVVNA YDTTRGRGRY GEMTSSRALV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle