YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114188122, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.75
Transmembrane Helix	18	42	0.83
Cytoplasmic	43	62	0.77
Transmembrane Helix	63	83	0.83
Non-Cytoplasmic	84	88	0.65
Transmembrane Helix	89	109	0.91
Cytoplasmic	110	115	0.83
Transmembrane Helix	116	136	0.92
Non-Cytoplasmic	137	152	0.90
Transmembrane Helix	153	175	0.91
Cytoplasmic	176	184	0.83
Transmembrane Helix	185	207	0.91
Non-Cytoplasmic	208	221	0.79
Transmembrane Helix	222	242	0.94
Cytoplasmic	243	251	0.80
Transmembrane Helix	252	274	0.87
Non-Cytoplasmic	275	281	0.74
Transmembrane Helix	282	301	0.92
Cytoplasmic	302	648	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIYARSDSA SRPASYKAIG IALAVASGLF IGVSFVIKKV GLLKANVKYN EEAGEGYGYL  60
   61 KNAWWWTGMT LMIVGEICNF VAYAFVDAIL VTPLGALSVV ITTILSAIFL KERLSFVGKV 120
  121 GCFTCILGSV IIAMNAPEQS SVSDIQDMKD YVIAPGFLSY AGVIVVGAIF TALWAGPRYG 180
  181 KKSMFVYISI CSSIGGLSVV ATQGLGAAIL AQINGKSQFN QWFLYVLAVF VIATLLTEII 240
  241 YLNKALNIFN AALVTPTYYV LFTSATIITS AILFRGFKGT GIQIATVIMG FLQICAGVVL 300
  301 LQLSKSAKDV PDAAVFKGDL DQIREVATQE EPESEPKADS IRGAASLIRR LSTPRRNLEA 360
  361 EEARRYYRER LEDQRHPPSP NEIIEWDGLR RRRTVIGQGP TMHAARAPSV RTPLPPLGMS 420
  421 RFPEENPDDH ADDRPGTKHS GHSILSDLRS RLSSAQWQPI QEEDGLRPMP LQPSRIDTSY 480
  481 HGSDPTAPPL PSPSPSQRAK RQFSFNVFKP HHSHHRSADR PRSKRHSNSE EERLGLVRAS 540
  541 VEDNLDEKLE RTYSSDSAEE TGHSLGLPSG LREEARDPPP AYPMPGLPPT SSSRVHRNPL 600
  601 PPLPDEPPYD PRVDGVRERS ESDVSAGTLS SARGVGQGGW RRPGGSFT