YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113907276, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISIKNKLG LTSKILIGMG TGIALGLLLR NAFPESDIVK DYITEGFLHV IGTIFISSLK  60
   61 MLVVPLVFIS LVCGTCSLSE PSKLGRLGGK TLAFYLFTTA IALVVAIVSA VLIHPGNASL 120
  121 ATEKMEYIAK EAPSLSSVLI NIVPTNPMQA LSEGNMLQII IFAVIFGFAI AHIGERGKRV 180
  181 AALFEDLNEV IMRVVTLIMQ LAPYGVFALM AKLALTLGLG TFESVVKYFF VVLGVLLVHA 240
  241 FIVYPTLLKL FSGLNPLIFI RKMRDVQLFA FSTASSNATL PITIEASEHR LGVDNKIAAF 300
  301 TLPLGATINM DGTAIMQGVA TVFIAQVFGI ELSLTDYAAV VVTATLASIG TAGVPGVGLI 360
  361 MLAMVLNQVG LPVEGIALII GVDRLLDMVR TAVNVTGDCV ATVVIAKSEG EFNEQVFNDT 420
  421 QAGKVARNFD EQVHHSNSSN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	29	0.92
Non-Cytoplasmic	30	50	0.84
Transmembrane Helix	51	74	0.86
Cytoplasmic	75	91	0.84
Transmembrane Helix	92	113	0.95
Non-Cytoplasmic	114	155	0.94
Transmembrane Helix	156	174	0.96
Cytoplasmic	175	193	0.90
Transmembrane Helix	194	215	0.87
Non-Cytoplasmic	216	227	0.77
Transmembrane Helix	228	248	0.91
Cytoplasmic	249	306	0.57
Transmembrane Helix	307	330	0.70
Non-Cytoplasmic	331	336	0.34
Transmembrane Helix	337	366	0.75
Cytoplasmic	367	440	0.64