YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113907533, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEINKYIQ DAKFPPAVQD DEIDLRELFS VIWQGKWLII AITAVFAIGS VVFAIMQPNI  60
   61 YKSEALLASA SAEQGGNLSA LASQFGGLAS LAGVNLGGKG GTDKTQLAIE VLKSRQFTSD 120
  121 FIQKHNILAD LMAAEMWDRD ADKLIYDPEL YNEQTNTWVR DIEPPFKPEP SMQEAYKEFS 180
  181 KIFSANTDKE TGMVTLSVEH LSPTVAEQWV TWLIEDINKV MKERDVAEAN RSSEFLNKQI 240
  241 ALTNVADIRT ILYKLVEEQA KTIMFAEVRD EYVFKTIDPA FAPEEKAKPK RALICVLGTI 300
  301 FGGMLGVMFV LVRHFIRKED

Type	Start	End	Confidence
Cytoplasmic	1	36	0.75
Transmembrane Helix	37	57	0.94
Non-Cytoplasmic	58	77	0.71
Transmembrane Helix	78	98	0.62
Cytoplasmic	99	292	0.89
Transmembrane Helix	293	316	0.88
Non-Cytoplasmic	317	320	0.88