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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|160876460, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.88
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLSLSRTS LTGRLMLAFS VLGVLLMLLV SLGSLSLHWL KQADSYLYEE SLPASQAARQ  60
   61 LVQASNALSD GVQQLGRVED ERQREFIGRK LSLESVNMFN GIKTLTILDV NEGQNLNQLA 120
  121 EQIISQLTSL GKSVGRRLTM GDELQLKAHE LSIAAGHASE LLQSELAVVN SAILAKLSQA 180
  181 YPDMAGAKRS GRLLDDVIEG ELDIQEQLNR ALKLVHQIAL LSQLFESSEL QSELQVSVPN 240
  241 LLATFASTNP SPSFTLPEPE MATAMDRALA HKTDSAPASS DINIDLMALD NVPEIIRDPG 300
  301 RLQALKTELA VLAHTPQIIK LQRELSQTLQ QQQRQQQELA EKLYGLNTLV DRALNQQQQQ 360
  361 AELARSDYLH QLSLARFGLW GTGALMFVVI GFVIYRVIYR GIALRLNQAT EAMSSLSLGD 420
  421 TNVSLEAHGD DELTAMANAI EAFKRKTAHN LKLQADLRQV ADELTEHKKA LEQTVAARTQ 480
  481 ELAETNNRLD AEAKGHAKAR QIAEEASQAK SQFLATMSHE IRTPLNGLLG TLTLLGHSEL 540
  541 PPAQQQMLAL SQYSGTLLQT VLNDILDFSR LEQGKLSHEP RPTDINTLLD EVLAIMVAGA 600
  601 NLAGLSLKMN KPKLPSCINI DGPKLRQVLF NLIGNGIKFT QEGCVTLTVS LQGTQLSFVV 660
  661 QDTGVGIVPA ALDKLFVPYS ALPNQGRSRG TGLGLAICKQ LVELMDASGR GIWVKSQPGK 720
  721 GSEFGFELAF NECDMTNNQA VKERVLVSAR QVMVVEDNKV NAMVAQGFLA HLGHKSVLAV 780
  781 SCQQALEFVE SSGLVFDAVL LDIQLSDGSG IDLLPQLKKL IANPNVKFAA FTAQMQSEDL 840
  841 QHYREAGFDA VLAKPLSLQT LTEWLGVAVS PFSASISSST VNDLLSAPPQ VTTETKIATT 900
  901 IADVDDEPLL DLKQLVQDKD VLGSEAMMSM LDLFSDSSRE QLAKLSLANP KEEVAKLLHG 960
  961 LKGSSASMGL IALAKLCKEL ELALKASADN ALELSEFQRL ESCRQASIAA LSQWLAAQND1020
 1021 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle