YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160874044, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQETSLTPSA AKPSRLGWFD DVLLLGIMAV LAGCGLIYEY LLSHYAGRIL GALEAAIYTM  60
   61 IGLMIVSMGL GAFAARKIRD AFTGFVILEL TVALCGSLAI LITAAVIGFG QQLPLMIANT 120
  121 LGLPPDQLPE GGMIGSLQKL SEYLPYVWGV LLGLMIGMEI PLIARVRQSL SDEHLLHNAG 180
  181 TIYGADYIGA GIGAAIWVGF MLAIDIQLAA ALTASFNLLA GFVFIWRFWP KIRRPKLLLT 240
  241 GHFIVTGILL VLAIHGPRWE QEFNNLLYKD KVVYAKATRF QQLTFTERLR GNGLSPVYAL 300
  301 YINGRLQFSS IDEHIYHAFL VHPTLAASAR HNKVLIIGGG DGLGLKQVLR WEPEQVTLLD 360
  361 LDVGLVQLFK SPDTDMPERL SRAMLTLNGN ALNDPRVTVI NDDAFNGVDK LIATGVKYDA 420
  421 IIVDLPDPSH PDLNKLYSDY FYRKLKELMS SDGALTVQST SPYHAPKAFI SVAKTLALAG 480
  481 FDVKQYHHNV PSFGEWGWSI ATAGGLDAQH RLAKLTELPI KDDWLTLGLV DGAFEFPANF 540
  541 YQDAAKIKPN ELGSLQLYHY HLQDWSENQG LNLF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	54	0.78
Transmembrane Helix	55	74	0.95
Cytoplasmic	75	84	0.83
Transmembrane Helix	85	107	0.93
Non-Cytoplasmic	108	143	0.93
Transmembrane Helix	144	164	0.93
Cytoplasmic	165	178	0.86
Transmembrane Helix	179	201	0.87
Non-Cytoplasmic	202	207	0.73
Transmembrane Helix	208	229	0.92
Cytoplasmic	230	237	0.89
Transmembrane Helix	238	257	0.95
Non-Cytoplasmic	258	574	0.99