YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_SHEB9
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALVNKIWY QGHPLRWLLL PLSWLFAVIT YVRRALFRLG IKSQTAMPVP VIVVGNITVG  60
   61 GSGKTPTVIY LIELLRQHGF TPGVISRGYG VDIQGVRTVN LGASAVEVGD EPAMIVARTQ 120
  121 VPMVVGAKRV DAANALIAEF GVDVIICDDG LQHYALGRDI ELVVIDGQRG LGNGLLLPAG 180
  181 PLREGAWRLD AVDFIVNNGG PAAKGQFEMQ LAPTEVKPVK CDLTSGEYSF DKSQPLVAMA 240
  241 GIGNPARFFE SLRAQGYQLA LCQGFDDHQP YDKTQLRDLA QDLPLLMTEK DAVKCRDFAQ 300
  301 ENWWYLAVNA KLSPQFDEQL LARLREVAAA KQGNFHGIR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.59
Transmembrane Helix	15	37	0.73
Cytoplasmic	38	48	0.52
Transmembrane Helix	49	63	0.40
Non-Cytoplasmic	64	339	0.73