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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113949218, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCQLEGLHIK SFIPYLKVNI FIALAYIVVG KLGLMIALPP GYSAAIWPAA GIAIAACILW  60
   61 KEYVPWVGVL IGSLLININI GGHIHWGWLP FAISIGSCIQ AVLSAHVLGR VDHLFTLDNP 120
  121 NTVIKSCLSL ALTCIVATVF GNSALVINGT IPPSDLLGSL VNWWTGDLLG AVIFIPLTML 180
  181 LFDKRTIWRA RRIQTGIPLL VGFLFCVGIY YYSDMNQRQQ LQDKFQIQSN AVISNIESFQ 240
  241 EANLQQIVAL ASLFDNSEQV SEDEFVQFGK RNMLQQDGFR AWSWSPLVAA ADLPSFEAST 300
  301 RSAIGGPYKV TRPQGWQTNT DGWLVPVMYI QPIIGNEAAL GLDLNSEPTR AAAIAKVRAT 360
  361 LAPVMTAKIQ LAQDPNGPGG TLLIAPAFDR LGRISGFCSA VIDLQSIIND VESVKGLQWK 420
  421 LSDMSAGGAL LYSNTTKSFP EFSNKLFSDK TGQYFQASLM LADRHWHIVI YQSYAVLMGD 480
  481 TFSLSLLMLL LAFITCAVVG GMTLVSSGER QRIAEKVTEK TMALSKEIAR RQAFQATLVQ 540
  541 SEQRYRNLFD KAPVGHVLKR LDDGQFVAIN PAFEAMTGYS LDELNQLDPW DLTPKRYQLS 600
  601 ETEQLERLKQ TRRYGPYQKH YVHKNGQLVA VRLNGALVTG ADGEQLILFI VEDITEQERT 660
  661 VARVNLLAQV FQQSGEGITI MDANDIIVDV NTAFSQITGY SREEIIGKNC RFLEAERTDK 720
  721 NIDPQVRAAL EQTGFWQGEV WDRHKHGYDF PKWLMMSVVR DDAGAVSHYI GSFTDISERK 780
  781 VSEERIHFLA HHDSLTLLPN RLSLQSRLEV VFREALASDS QIAVMFIDMD HFKNINDTLG 840
  841 HHVGDQLLLE VARRLKNIVG DTDTVARLGG DEFVVALSDT NHDEVASLAE ALRSGLSQTY 900
  901 VINNQALHSS PSIGISLFPT DGDSVEALMK NADMAMYRAK SAGRNNYQFF TAAMNTLITE 960
  961 RQQIETGLRQ VLANDELRLH YQPQIDIRTG QVVSVEALVR WQHPEFGMVA PDRFIPIAEE1020
 1021 IDMIIPIGQW VLETAMAQLA AWRAAGATEL RMAVNLSAHQ LRKDSIVADI TNVLLKHKLG1080
 1081 KGALELEITE SVAMQYPEQN ARLLAELRQH GIELAIDDFG TGYSSLSYLK LLPLDRLKLD1140
 1141 RSFVKDIESD PNDAAISAAT ISMSHELGLT VVAEGVENEA QLVLLSSMGC DLVQGFYFSK1200
 1201 PLPAEECFRF ILRNL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle