YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113909624, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERLFIRLG RTAEQACSWL VWSEQEQEII ASGELANAQG LSTLTERAGN RPVDVLVPAA  60
   61 AMTLTSVHLP EKGQRQALKA LPFMLEEALA EDVDAMHFTV GPRDGDALSV VAVAHEQMQT 120
  121 WLSCLTEAGL KVKRIVPDCL ALPLQECQWA AMNFGNELLL RTGLATGQSL PLPWLPIALE 180
  181 QLRPAQGEVS VASYTDMQLE GVELKPQSLE LPMLVLARGI LHAPVNLLGG VYTPKREYSK 240
  241 QLMMWKSAVI VIAIACVLAL VNKGLTIHQV NGQIADLKAQ SESIYQQLVP GNSRIVNLRS 300
  301 QMESQLRALQ GQGSGAEFFA MLDGLQDAFK QVPELKPNSL RFESARNEIR MQVSAKNYAQ 360
  361 IEKFKEIVGR RFQLDGGTMN SGEDQVTSTL TLRSK

Type	Start	End	Confidence
Non-Cytoplasmic	1	213	0.52
Transmembrane Helix	214	232	0.39
Cytoplasmic	233	241	0.67
Transmembrane Helix	242	261	0.78
Non-Cytoplasmic	262	395	0.83