YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113909753, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	40	0.97
Non-Cytoplasmic	41	53	0.82
Transmembrane Helix	54	74	0.90
Cytoplasmic	75	89	0.85
Transmembrane Helix	90	111	0.94
Non-Cytoplasmic	112	153	0.95
Transmembrane Helix	154	174	0.93
Cytoplasmic	175	196	0.88
Transmembrane Helix	197	215	0.91
Non-Cytoplasmic	216	224	0.74
Transmembrane Helix	225	248	0.88
Cytoplasmic	249	261	0.79
Transmembrane Helix	262	282	0.70
Non-Cytoplasmic	283	312	0.67
Transmembrane Helix	313	330	0.68
Cytoplasmic	331	332	0.41
Transmembrane Helix	333	357	0.70
Non-Cytoplasmic	358	358	0.37
Transmembrane Helix	359	382	0.68
Cytoplasmic	383	444	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPKSSALG RVWSRWMSVP LWLQIVIGMV LGIIVGVIFG EQATCLKPLG TLFVNAIKML  60
   61 IVPLVFCSLI VGVTSMQDTG KMGRIGIKSF GFYLFTTAIA ISIGLLVGYV LQPGAGLGLT 120
  121 LAEGATQTAK AVPSLVDTLV DIVPTNPIAA MASGQILQVI VFAIALGIAL VLIGEHGKPA 180
  181 IKVFESLAEA MYKLADMVMK LAPYGVFGLM AWVAGEYGID MLWPLIKVII AVYLGCIIHV 240
  241 LGFYSFLLRG FAKLSPLQFF KGISNAMLVA FTTSSSAGTL PASMKCASEN LGVHKKISSF 300
  301 VLPLGTTINM DGTALYQGVT VLFVAQAFGI DLTVVDYFTI ILTATLASIG TAGVPGAGLV 360
  361 MLTLVLTTVG LPLEGVALIA GIDRILDMVR TVVNVSGDLV ATTVIAKSED ELDMAHYNAD 420
  421 TEQSAVLAEQ NIALETAAEN SAKV