YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113910144, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFISILGQ HPYLFMALSF IFAATIGSFL NVVIHRFPVM MKREWQQECN QYLQEYHEDI  60
   61 VKKIGIDQLN KPIDAFPEKY NLVVPGSACP KCKTSIKPWH NLPVLGWLML KGKCAACHAP 120
  121 ISARYPIIEF ITGLLIATLA WHFGPSWQFV FASILTFVLV ALTGIDLDEM LLPDQMTLPL 180
  181 LWLGLIINLN HIFASPTDAI IGAAAGYLSL WSIFWLFKIL TGKEGMGYGD FKLLAVFGAW 240
  241 LGWQMLPLVI LLSSLVAAVV GITMIVSKRL KQGNPIPFGP YIAAAGWIAL LFGQQIVDWY 300
  301 LSTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.95
Transmembrane Helix	13	34	0.94
Cytoplasmic	35	124	0.95
Transmembrane Helix	125	143	0.75
Non-Cytoplasmic	144	148	0.58
Transmembrane Helix	149	167	0.85
Cytoplasmic	168	177	0.58
Transmembrane Helix	178	211	0.75
Non-Cytoplasmic	212	242	0.55
Transmembrane Helix	243	266	0.87
Cytoplasmic	267	276	0.70
Transmembrane Helix	277	297	0.89
Non-Cytoplasmic	298	304	0.75