YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113947484, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.74
Transmembrane Helix	5	23	0.91
Cytoplasmic	24	29	0.65
Transmembrane Helix	30	49	0.79
Non-Cytoplasmic	50	56	0.75
Transmembrane Helix	57	75	0.94
Cytoplasmic	76	84	0.77
Transmembrane Helix	85	106	0.92
Non-Cytoplasmic	107	113	0.72
Transmembrane Helix	114	133	0.95
Cytoplasmic	134	147	0.88
Transmembrane Helix	148	169	0.90
Non-Cytoplasmic	170	179	0.75
Transmembrane Helix	180	202	0.86
Cytoplasmic	203	213	0.90
Transmembrane Helix	214	233	0.86
Non-Cytoplasmic	234	237	0.54
Transmembrane Helix	238	256	0.81
Cytoplasmic	257	266	0.78
Transmembrane Helix	267	288	0.82
Non-Cytoplasmic	289	294	0.63
Transmembrane Helix	295	314	0.93
Cytoplasmic	315	324	0.75
Transmembrane Helix	325	346	0.88
Non-Cytoplasmic	347	354	0.74
Transmembrane Helix	355	374	0.92
Cytoplasmic	375	648	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHSFLIQVL LMLVIAIVAI AVLRRLGLPA ILAYLLTGVV SGPSGFHWFT QHQMQSVAEL  60
   61 GVVLLMFTLG LEFSVPRLWA MRRTVFGLGS AQMVITTLLT MGVALLCGLN WVEALVIGAA 120
  121 IALSSTAIVL KLLNEQGWLR RRHGELSVSV LLFQDLAVVP LLILLPLLAN GGEPLMVADI 180
  181 AFALLKGILA FFLLMAFGKW ALPRIFDEVA RSRSNELFVL STLVVALVTG AFTQWLGLSM 240
  241 ALGAFMAGML LGESQYRRQL EADIRPFRDL LMGLFFISIG MMLDFTLVMR FWWQILLILL 300
  301 AVVLGKALII HGILRLVGEP FRIAMSTAMS LAQVGEFSFV VLALAVNYQL LDNEISTMLV 360
  361 MVAVLSMTIA PWLVRHSVDI AKWVLGIRQA KHVDEAVPLL MDEHDLVMIF GYGRVGQTIA 420
  421 RFLKTEAVPY LVMDLDPTRV SEARRAGEPI YFGDVCKRAM LKQIGVKQAK MIVITFCESR 480
  481 SLEEVLPLCK LLAPDAKILV RTKDDSDLDL LKKAGANQVI PESLEGSLML VSQVLHQCGV 540
  541 PLARILKRLE SERRNHYQFL HGFFSGTETD FTLESLHAVA LPRGADAIGK TVAEIMWETL 600
  601 RVELRAIRRS GAEVEHPEQD WVFRAGDILL IVGKPRRLEK AEAKLLHG