YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160877441, gi...
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRSAFSQTV MLIGCLLLIN QLVSYVTVAV YVLKPSYQQI NQLIARQVKL LFVDGIDIGR  60
   61 EHLTIVDALN AKVHDDGMKI YNQQQAREAG IEQATYYGFW SAQMSEYLGG DAEVRVTHGS 120
  121 VLQIWIRPPQ APSIWIKVPL IGQNVSDLSP LTLYLMVIGA LSVAGGWWFA RQQNRPLRRL 180
  181 QKAAIAVSRG EFPEPLPLNG SSEIVEVTNA FNQMAHSMKQ LEQDRALLMA GISHDLRTPL 240
  241 TRIRLASEMM VEEDQYLKDG IVNDIEDMDA IISQFIAYIR QDQETSRELG QINKLIQDVA 300
  301 QAEANRAGEI EVVLTDCPEA QFQAIAIKRV LSNLVENAFR YGSGWIRISS QFDGKRIGFT 360
  361 VEDNGPGIDE SQITKLFQPF TQGDIARGSV GSGLGLAIIK RIIDRHQGQV TLSNRAEGGL 420
  421 RAQVWLPLE

Type	Start	End	Confidence
Cytoplasmic	1	9	0.43
Transmembrane Helix	10	30	0.49
Non-Cytoplasmic	31	150	0.87
Transmembrane Helix	151	170	0.90
Cytoplasmic	171	429	0.81